GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_005G218100 [ B456_005G218100]	5	60131834	60133076	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB31999 KJB31999	High	No	231	OG0011248		Get ORF Coding potential... Type: noncoding Potential: -0.793 Folding energies... MFEI: -15.671 AMFE: -0.338 GC content %: 46.320
Graimondii_KJB32000 KJB32000	High	No	461	OG0179073		Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -18.937 AMFE: -0.490 GC content %: 38.612
Graimondii_KJB32001 KJB32001	High	No	397	OG0011248		Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -22.771 AMFE: -0.532 GC content %: 42.821

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).