Graimondii B456 006G000600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_006G000600 [ B456_006G000600] |
6 | 207218 | 208701 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB33206 KJB33206 |
High | No | 981 | OG0034633 | Get ORF Coding potential... Type: noncoding Potential: -0.518 Folding energies... MFEI: -25.291 AMFE: -0.628 GC content %: 40.265 | |
| Graimondii_KJB33207 KJB33207 |
High | No | 876 | OG0034633 | Get ORF Coding potential... Type: noncoding Potential: -0.716 Folding energies... MFEI: -26.587 AMFE: -0.624 GC content %: 42.580 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
