GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_006G107000 [ B456_006G107000]	6	35000812	35002598	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB35256 KJB35256	High	No	249	OG0000454		Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -33.012 AMFE: -0.583 GC content %: 56.627
Graimondii_KJB35257 KJB35257	High	No	1688	OG0000454		Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -28.027 AMFE: -0.686 GC content %: 40.877
Graimondii_KJB35258 KJB35258	High	No	348	OG0000454		Get ORF Coding potential... Type: noncoding Potential: -0.541 Folding energies... MFEI: -26.983 AMFE: -0.505 GC content %: 53.448

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).