GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_006G122200 [ B456_006G122200]	6	37353935	37357707	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB33130 KJB33130	High	No	1578	OG0179116		Get ORF Coding potential... Type: noncoding Potential: -0.646 Folding energies... MFEI: -22.769 AMFE: -0.639 GC content %: 35.615
Graimondii_KJB33131 KJB33131	High	No	878	OG0005415		Get ORF Coding potential... Type: noncoding Potential: -0.196 Folding energies... MFEI: -25.900 AMFE: -0.677 GC content %: 38.269
Graimondii_KJB33132 KJB33132	High	No	857	OG0179117		Get ORF Coding potential... Type: noncoding Potential: -0.493 Folding energies... MFEI: -21.564 AMFE: -0.602 GC content %: 35.823

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).