Graimondii B456 006G157400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_006G157400 [ B456_006G157400] |
6 | 41645376 | 41647413 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB33136 KJB33136 |
High | No | 1878 | OG0179118 | Get ORF Coding potential... Type: noncoding Potential: -0.266 Folding energies... MFEI: -24.643 AMFE: -0.703 GC content %: 35.037 | |
| Graimondii_KJB33137 KJB33137 |
High | No | 294 | OG0179119 | Get ORF Coding potential... Type: noncoding Potential: -0.267 Folding energies... MFEI: -23.639 AMFE: -0.560 GC content %: 42.177 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
