GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_006G230200 [ B456_006G230200]	6	48030149	48031655	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB37987 KJB37987	High	No	1318	OG0001683		Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -24.939 AMFE: -0.691 GC content %: 36.115
Graimondii_KJB37988 KJB37988	High	No	1281	OG0001683		Get ORF Coding potential... Type: noncoding Potential: -1.070 Folding energies... MFEI: -24.957 AMFE: -0.685 GC content %: 36.456
Graimondii_KJB37989 KJB37989	High	No	1094	OG0001683		Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -26.106 AMFE: -0.690 GC content %: 37.843

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).