Graimondii B456 007G173900
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_007G173900 [ B456_007G173900] |
7 | 16029224 | 16030317 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB42909 KJB42909 |
High | No | 1004 | OG0002542 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -24.761 AMFE: -0.628 GC content %: 39.442 | |
| Graimondii_KJB42910 KJB42910 |
High | No | 309 | OG0002542 | Get ORF Coding potential... Type: noncoding Potential: -0.261 Folding energies... MFEI: -23.851 AMFE: -0.580 GC content %: 41.100 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
