GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_009G171400 [ B456_009G171400]	9	13251259	13253945	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB53552 KJB53552	High	No	1419	OG0001652		Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -21.395 AMFE: -0.576 GC content %: 37.139
Graimondii_KJB53553 KJB53553	High	No	2077	OG0001652		Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -23.038 AMFE: -0.622 GC content %: 37.025
Graimondii_KJB53554 KJB53554	High	No	327	OG0179548		Get ORF Coding potential... Type: noncoding Potential: -0.424 Folding energies... MFEI: -26.024 AMFE: -0.546 GC content %: 47.706

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).