GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_009G220200 [ B456_009G220200]	9	17088659	17090458	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB58652 KJB58652	High	No	876	OG0004018		Get ORF Coding potential... Type: noncoding Potential: -0.503 Folding energies... MFEI: -25.411 AMFE: -0.643 GC content %: 39.498
Graimondii_KJB58653 KJB58653	High	No	642	OG0179610		Get ORF Coding potential... Type: noncoding Potential: -0.536 Folding energies... MFEI: -23.380 AMFE: -0.573 GC content %: 40.810
Graimondii_KJB58654 KJB58654	High	No	863	OG0004018		Get ORF Coding potential... Type: noncoding Potential: -0.499 Folding energies... MFEI: -25.632 AMFE: -0.647 GC content %: 39.629
Graimondii_KJB58655 KJB58655	High	No	234	OG0179611		Get ORF Coding potential... Type: noncoding Potential: -0.292 Folding energies... MFEI: -31.624 AMFE: -0.617 GC content %: 51.282

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).