Graimondii B456 009G414000
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_009G414000 [ B456_009G414000] |
9 | 63302318 | 63305167 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB62369 KJB62369 |
High | No | 801 | OG0003892 | Get ORF Coding potential... Type: noncoding Potential: -1.240 Folding energies... MFEI: -24.232 AMFE: -0.634 GC content %: 38.202 | |
| Graimondii_KJB62370 KJB62370 |
High | No | 964 | OG0005224 | Get ORF Coding potential... Type: noncoding Potential: -0.996 Folding energies... MFEI: -24.087 AMFE: -0.618 GC content %: 39.004 | |
| Graimondii_KJB62371 KJB62371 |
High | No | 737 | OG0003892 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -24.600 AMFE: -0.638 GC content %: 38.535 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
