Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Graimondii_B456_009G417000 [ B456_009G417000] |
9 | 64545088 | 64546902 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Graimondii_KJB62440 KJB62440 |
High | No | 234 | OG0179686 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -17.735 AMFE: -0.355 GC content %: 50.000 | |
Graimondii_KJB62441 KJB62441 |
Low | No | 1437 | OG0179687 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -20.501 AMFE: -0.595 GC content %: 34.447 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_KJB62441 | SwissProt | 2021-04-01 | O22975 | 9.59e-5 |