Graimondii B456 011G086200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_011G086200 [ B456_011G086200] |
11 | 8943279 | 8945091 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB70668 KJB70668 |
Low | No | 1711 | OG0179903 | Get ORF Coding potential... Type: noncoding Potential: -0.036 Folding energies... MFEI: -24.085 AMFE: -0.717 GC content %: 33.606 | |
| Graimondii_KJB70669 KJB70669 |
Low | No | 1626 | OG0179904 | Get ORF Coding potential... Type: noncoding Potential: -0.085 Folding energies... MFEI: -24.262 AMFE: -0.720 GC content %: 33.702 | |
| Graimondii_KJB70670 KJB70670 |
Low | No | 1542 | OG0034692 | Get ORF Coding potential... Type: noncoding Potential: -0.078 Folding energies... MFEI: -24.455 AMFE: -0.720 GC content %: 33.982 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Graimondii_KJB70669 | SwissProt | 2021-04-01 | P38385 | 2.97e-26 |
| Graimondii_KJB70670 | SwissProt | 2021-04-01 | P38385 | 2.54e-26 |
| Graimondii_KJB70668 | SwissProt | 2021-04-01 | P38385 | 4.41e-26 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
