Graimondii B456 011G189600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_011G189600 [ B456_011G189600] |
11 | 45381176 | 45384331 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB72674 KJB72674 |
High | No | 877 | OG0003093 | Get ORF Coding potential... Type: noncoding Potential: -0.219 Folding energies... MFEI: -20.547 AMFE: -0.581 GC content %: 35.348 | |
| Graimondii_KJB72675 KJB72675 |
High | No | 594 | OG0003093 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -16.966 AMFE: -0.492 GC content %: 34.512 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
