Graimondii B456 011G228700
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_011G228700 [ B456_011G228700] |
11 | 54202941 | 54204171 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB73341 KJB73341 |
High | No | 1102 | OG0005474 | Get ORF Coding potential... Type: noncoding Potential: -1.214 Folding energies... MFEI: -20.644 AMFE: -0.530 GC content %: 38.929 | |
| Graimondii_KJB73342 KJB73342 |
High | No | 324 | OG0179979 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -21.080 AMFE: -0.474 GC content %: 44.444 | |
| Graimondii_KJB73343 KJB73343 |
High | No | 1116 | OG0005474 | Get ORF Coding potential... Type: noncoding Potential: -1.216 Folding energies... MFEI: -20.385 AMFE: -0.525 GC content %: 38.799 | |
| Graimondii_KJB73344 KJB73344 |
High | No | 324 | OG0179980 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -21.080 AMFE: -0.474 GC content %: 44.444 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
