Graimondii B456 012G010700
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_012G010700 [ B456_012G010700] |
12 | 1202876 | 1205966 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB74554 KJB74554 |
Low | No | 1918 | OG0000301 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -23.874 AMFE: -0.689 GC content %: 34.672 | |
| Graimondii_KJB74555 KJB74555 |
High | No | 1689 | OG0000301 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -24.417 AMFE: -0.656 GC content %: 37.241 | |
| Graimondii_KJB74556 KJB74556 |
High | No | 1659 | OG0000301 | Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -24.400 AMFE: -0.654 GC content %: 37.312 | |
| Graimondii_KJB74557 KJB74557 |
High | No | 1689 | OG0000301 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -24.417 AMFE: -0.656 GC content %: 37.241 | |
| Graimondii_KJB74558 KJB74558 |
Low | No | 1931 | OG0000301 | Get ORF Coding potential... Type: noncoding Potential: -0.848 Folding energies... MFEI: -23.884 AMFE: -0.691 GC content %: 34.542 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Graimondii_KJB74554 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Maverick | |
| Graimondii_KJB74558 | RepBase (RepeatMasker) | 2014-01-31 | DNA/Maverick |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
