Graimondii B456 013G074000
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Graimondii_B456_013G074000 [ B456_013G074000] |
13 | 8924219 | 8926723 | v6 | Gossypium raimondii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Graimondii_KJB79948 KJB79948 |
Low | No | 734 | OG0005570 | Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -25.191 AMFE: -0.581 GC content %: 43.324 | |
| Graimondii_KJB79949 KJB79949 |
Low | No | 658 | OG0005570 | Get ORF Coding potential... Type: noncoding Potential: -0.752 Folding energies... MFEI: -24.453 AMFE: -0.579 GC content %: 42.249 | |
| Graimondii_KJB79950 KJB79950 |
Low | No | 1887 | OG0180148 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -23.021 AMFE: -0.613 GC content %: 37.573 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Graimondii_KJB79950 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Graimondii_KJB79948 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 | |
| Graimondii_KJB79949 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
