GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Graimondii_B456_013G137900 [ B456_013G137900]	13	36793643	36796624	v6	Gossypium raimondii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Graimondii_KJB81300 KJB81300	High	No	909	OG0000923		Get ORF Coding potential... Type: noncoding Potential: -0.591 Folding energies... MFEI: -24.862 AMFE: -0.630 GC content %: 39.494
Graimondii_KJB81301 KJB81301	High	No	918	OG0000923		Get ORF Coding potential... Type: noncoding Potential: -0.628 Folding energies... MFEI: -25.218 AMFE: -0.634 GC content %: 39.760
Graimondii_KJB81303 KJB81303	High	No	942	OG0000923		Get ORF Coding potential... Type: noncoding Potential: -0.634 Folding energies... MFEI: -24.947 AMFE: -0.628 GC content %: 39.703

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).