GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A01G044400 [ Gotom.A01G044400]	A01	3473523	3475997	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A01G044400.1 Gotom.A01G044400.1	High	No	1167	OG0001188		Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -27.558 AMFE: -0.673 GC content %: 40.960
Gtomentosum_Gotom.A01G044400.2 Gotom.A01G044400.2	High	No	1164	OG0001188		Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -27.612 AMFE: -0.675 GC content %: 40.893
Gtomentosum_Gotom.A01G044400.3 Gotom.A01G044400.3	High	No	986	OG0001188		Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -27.262 AMFE: -0.672 GC content %: 40.568
Gtomentosum_Gotom.A01G044400.4 Gotom.A01G044400.4	High	No	983	OG0001188		Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -27.325 AMFE: -0.675 GC content %: 40.488

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).