GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A01G044600 [ Gotom.A01G044600]	A01	3480139	3481815	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A01G044600.1 Gotom.A01G044600.1	High	No	837	OG0001188		Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -23.047 AMFE: -0.599 GC content %: 38.471
Gtomentosum_Gotom.A01G044600.2 Gotom.A01G044600.2	High	No	834	OG0001188		Get ORF Coding potential... Type: noncoding Potential: -0.969 Folding energies... MFEI: -22.950 AMFE: -0.598 GC content %: 38.369
Gtomentosum_Gotom.A01G044600.3 Gotom.A01G044600.3	High	No	649	OG0001188		Get ORF Coding potential... Type: noncoding Potential: -1.289 Folding energies... MFEI: -25.039 AMFE: -0.635 GC content %: 39.445
Gtomentosum_Gotom.A01G044600.4 Gotom.A01G044600.4	High	No	646	OG0001188		Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -25.124 AMFE: -0.639 GC content %: 39.319

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).