Gtomentosum Gotom.A01G046600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.A01G046600 [ Gotom.A01G046600] |
A01 | 3841515 | 3846947 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.A01G046600.1 Gotom.A01G046600.1 |
High | No | 694 | OG0180307 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -29.251 AMFE: -0.636 GC content %: 45.965 | |
| Gtomentosum_Gotom.A01G046600.2 Gotom.A01G046600.2 |
High | No | 688 | OG0011884 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -27.951 AMFE: -0.603 GC content %: 46.366 | |
| Gtomentosum_Gotom.A01G046600.3 Gotom.A01G046600.3 |
High | No | 683 | OG0011884 | Get ORF Coding potential... Type: noncoding Potential: -1.121 Folding energies... MFEI: -27.555 AMFE: -0.596 GC content %: 46.266 | |
| Gtomentosum_Gotom.A01G046600.4 Gotom.A01G046600.4 |
High | No | 861 | OG0011884 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -27.642 AMFE: -0.635 GC content %: 43.554 | |
| Gtomentosum_Gotom.A01G046600.5 Gotom.A01G046600.5 |
High | No | 642 | OG0011884 | Get ORF Coding potential... Type: noncoding Potential: -1.101 Folding energies... MFEI: -29.938 AMFE: -0.632 GC content %: 47.352 | |
| Gtomentosum_Gotom.A01G046600.6 Gotom.A01G046600.6 |
High | No | 936 | OG0034725 | Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -27.735 AMFE: -0.594 GC content %: 46.688 | |
| Gtomentosum_Gotom.A01G046600.7 Gotom.A01G046600.7 |
High | No | 941 | OG0034725 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -28.034 AMFE: -0.600 GC content %: 46.759 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
