GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A01G061700 [ Gotom.A01G061700]	A01	6116861	6119677	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A01G061700.1 Gotom.A01G061700.1	High	No	814	OG0032982		Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -24.300 AMFE: -0.664 GC content %: 36.609
Gtomentosum_Gotom.A01G061700.2 Gotom.A01G061700.2	High	No	801	OG0032983		Get ORF Coding potential... Type: noncoding Potential: -1.359 Folding energies... MFEI: -24.432 AMFE: -0.661 GC content %: 36.954

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).