Gtomentosum Gotom.A01G138100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.A01G138100 [ Gotom.A01G138100] |
A01 | 26240801 | 26243429 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.A01G138100.1 Gotom.A01G138100.1 |
High | No | 671 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.979 Folding energies... MFEI: -24.367 AMFE: -0.612 GC content %: 39.791 | |
| Gtomentosum_Gotom.A01G138100.2 Gotom.A01G138100.2 |
High | No | 694 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -24.193 AMFE: -0.615 GC content %: 39.337 | |
| Gtomentosum_Gotom.A01G138100.3 Gotom.A01G138100.3 |
High | No | 606 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -23.218 AMFE: -0.599 GC content %: 38.779 | |
| Gtomentosum_Gotom.A01G138100.4 Gotom.A01G138100.4 |
High | No | 715 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -24.056 AMFE: -0.616 GC content %: 39.021 | |
| Gtomentosum_Gotom.A01G138100.5 Gotom.A01G138100.5 |
High | No | 791 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -24.134 AMFE: -0.624 GC content %: 38.685 | |
| Gtomentosum_Gotom.A01G138100.6 Gotom.A01G138100.6 |
High | No | 664 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -23.855 AMFE: -0.602 GC content %: 39.608 | |
| Gtomentosum_Gotom.A01G138100.7 Gotom.A01G138100.7 |
High | No | 607 | OG0000330 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -24.547 AMFE: -0.623 GC content %: 39.374 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
