GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A01G178200 [ Gotom.A01G178200]	A01	78679815	78686351	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A01G178200.1 Gotom.A01G178200.1	High	No	1692	OG0001969		Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -22.725 AMFE: -0.545 GC content %: 41.726
Gtomentosum_Gotom.A01G178200.2 Gotom.A01G178200.2	High	No	345	OG0180374		Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -23.884 AMFE: -0.493 GC content %: 48.406

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).