GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A01G197900 [ Gotom.A01G197900]	A01	101082557	101085261	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A01G197900.1 Gotom.A01G197900.1	High	No	1046	OG0001028		Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -20.746 AMFE: -0.604 GC content %: 34.321
Gtomentosum_Gotom.A01G197900.2 Gotom.A01G197900.2	High	No	1103	OG0001028		Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -21.170 AMFE: -0.608 GC content %: 34.814
Gtomentosum_Gotom.A01G197900.3 Gotom.A01G197900.3	High	No	1124	OG0001028		Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -21.121 AMFE: -0.617 GC content %: 34.253
Gtomentosum_Gotom.A01G197900.4 Gotom.A01G197900.4	High	No	1107	OG0001028		Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -21.283 AMFE: -0.622 GC content %: 34.237

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).