GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A02G068700 [ Gotom.A02G068700]	A02	8363318	8365960	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A02G068700.1 Gotom.A02G068700.1	High	No	1028	OG0003198		Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -24.105 AMFE: -0.623 GC content %: 38.716
Gtomentosum_Gotom.A02G068700.2 Gotom.A02G068700.2	High	No	1015	OG0003198		Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -24.512 AMFE: -0.633 GC content %: 38.719
Gtomentosum_Gotom.A02G068700.3 Gotom.A02G068700.3	High	No	993	OG0003198		Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -23.635 AMFE: -0.640 GC content %: 36.959

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).