Gtomentosum Gotom.A02G068700

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Gtomentosum_Gotom.A02G068700
[ Gotom.A02G068700]
A02 8363318 8365960 v1.1 Gossypium tomentosum (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Gtomentosum_Gotom.A02G068700.1
Gotom.A02G068700.1
High No 1028 OG0003198
Coding potential...
Type: noncoding Potential: -0.923
Folding energies...
MFEI: -24.105 AMFE: -0.623
GC content
%: 38.716
Gtomentosum_Gotom.A02G068700.2
Gotom.A02G068700.2
High No 1015 OG0003198
Coding potential...
Type: noncoding Potential: -0.920
Folding energies...
MFEI: -24.512 AMFE: -0.633
GC content
%: 38.719
Gtomentosum_Gotom.A02G068700.3
Gotom.A02G068700.3
High No 993 OG0003198
Coding potential...
Type: noncoding Potential: -0.916
Folding energies...
MFEI: -23.635 AMFE: -0.640
GC content
%: 36.959


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gtomentosum_Gotom.A02G068700.png