GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A02G127400 [ Gotom.A02G127400]	A02	49008523	49019308	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A02G127400.1 Gotom.A02G127400.1	High	No	835	OG0011885		Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -15.880 AMFE: -0.403 GC content %: 39.401
Gtomentosum_Gotom.A02G127400.2 Gotom.A02G127400.2	High	No	585	OG0011885		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -18.308 AMFE: -0.434 GC content %: 42.222
Gtomentosum_Gotom.A02G127400.3 Gotom.A02G127400.3	High	No	804	OG0011885		Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -15.784 AMFE: -0.404 GC content %: 39.055
Gtomentosum_Gotom.A02G127400.4 Gotom.A02G127400.4	High	No	639	OG0011885		Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -15.540 AMFE: -0.388 GC content %: 40.063

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).