Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gtomentosum_Gotom.A03G155000 [ Gotom.A03G155000] |
A03 | 87442660 | 87446483 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gtomentosum_Gotom.A03G155000.1 Gotom.A03G155000.1 |
High | No | 762 | OG0004114 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -24.357 AMFE: -0.690 GC content %: 35.302 | |
Gtomentosum_Gotom.A03G155000.2 Gotom.A03G155000.2 |
Low | No | 727 | OG0004114 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -23.810 AMFE: -0.679 GC content %: 35.076 | |
Gtomentosum_Gotom.A03G155000.3 Gotom.A03G155000.3 |
Low | No | 721 | OG0004114 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -22.968 AMFE: -0.657 GC content %: 34.951 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gtomentosum_Gotom.A03G155000.2 | SwissProt | 2021-04-01 | Q5R4A3 | 5.05e-4 |
Gtomentosum_Gotom.A03G155000.3 | SwissProt | 2021-04-01 | Q5R4A3 | 5.03e-4 |