GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A10G149400 [ Gotom.A10G149400]	A10	65946548	65947881	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A10G149400.1 Gotom.A10G149400.1	High	No	924	OG0011886		Get ORF Coding potential... Type: noncoding Potential: -1.386 Folding energies... MFEI: -27.576 AMFE: -0.660 GC content %: 41.775
Gtomentosum_Gotom.A10G149400.2 Gotom.A10G149400.2	High	No	701	OG0011886		Get ORF Coding potential... Type: noncoding Potential: -1.376 Folding energies... MFEI: -29.643 AMFE: -0.670 GC content %: 44.223
Gtomentosum_Gotom.A10G149400.3 Gotom.A10G149400.3	High	No	1003	OG0011886		Get ORF Coding potential... Type: noncoding Potential: -1.388 Folding energies... MFEI: -29.232 AMFE: -0.680 GC content %: 42.971
Gtomentosum_Gotom.A10G149400.4 Gotom.A10G149400.4	High	No	606	OG0011886		Get ORF Coding potential... Type: noncoding Potential: -1.370 Folding energies... MFEI: -27.079 AMFE: -0.641 GC content %: 42.244

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).