GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A10G242100 [ Gotom.A10G242100]	A10	103151565	103155462	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A10G242100.1 Gotom.A10G242100.1	High	No	1130	OG0001373		Get ORF Coding potential... Type: noncoding Potential: -0.688 Folding energies... MFEI: -23.106 AMFE: -0.631 GC content %: 36.637
Gtomentosum_Gotom.A10G242100.2 Gotom.A10G242100.2	High	No	1077	OG0001373		Get ORF Coding potential... Type: noncoding Potential: -0.676 Folding energies... MFEI: -23.918 AMFE: -0.634 GC content %: 37.697
Gtomentosum_Gotom.A10G242100.3 Gotom.A10G242100.3	High	No	336	OG0181505		Get ORF Coding potential... Type: noncoding Potential: -0.391 Folding energies... MFEI: -23.155 AMFE: -0.552 GC content %: 41.964

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).