Gtomentosum Gotom.A11G221800
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.A11G221800 [ Gotom.A11G221800] |
A11 | 34735030 | 34740638 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.A11G221800.1 Gotom.A11G221800.1 |
High | No | 792 | OG0034787 | Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -20.859 AMFE: -0.558 GC content %: 37.374 | |
| Gtomentosum_Gotom.A11G221800.2 Gotom.A11G221800.2 |
High | No | 830 | OG0001375 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -18.699 AMFE: -0.533 GC content %: 35.060 | |
| Gtomentosum_Gotom.A11G221800.3 Gotom.A11G221800.3 |
High | No | 664 | OG0001375 | Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -19.714 AMFE: -0.559 GC content %: 35.241 | |
| Gtomentosum_Gotom.A11G221800.4 Gotom.A11G221800.4 |
High | No | 649 | OG0034787 | Get ORF Coding potential... Type: noncoding Potential: -0.761 Folding energies... MFEI: -17.627 AMFE: -0.520 GC content %: 33.898 | |
| Gtomentosum_Gotom.A11G221800.5 Gotom.A11G221800.5 |
High | No | 986 | OG0001375 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -21.227 AMFE: -0.561 GC content %: 37.830 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
