GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.A12G040700 [ Gotom.A12G040700]	A12	6721310	6724206	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.A12G040700.5 Gotom.A12G040700.5	High	No	744	OG0011679		Get ORF Coding potential... Type: noncoding Potential: -0.583 Folding energies... MFEI: -21.747 AMFE: -0.658 GC content %: 33.065
Gtomentosum_Gotom.A12G040700.6 Gotom.A12G040700.6	High	No	749	OG0011679		Get ORF Coding potential... Type: noncoding Potential: -0.865 Folding energies... MFEI: -22.470 AMFE: -0.676 GC content %: 33.244
Gtomentosum_Gotom.A12G040700.7 Gotom.A12G040700.7	High	No	270	OG0181690		Get ORF Coding potential... Type: noncoding Potential: -0.459 Folding energies... MFEI: -20.074 AMFE: -0.516 GC content %: 38.889

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).