Gtomentosum Gotom.D03G125100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D03G125100 [ Gotom.D03G125100] |
D03 | 37777085 | 37784503 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D03G125100.1 Gotom.D03G125100.1 |
High | No | 1035 | OG0182272 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -24.058 AMFE: -0.659 GC content %: 36.522 | |
| Gtomentosum_Gotom.D03G125100.2 Gotom.D03G125100.2 |
High | No | 954 | OG0182273 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -23.459 AMFE: -0.658 GC content %: 35.639 | |
| Gtomentosum_Gotom.D03G125100.3 Gotom.D03G125100.3 |
High | No | 951 | OG0182274 | Get ORF Coding potential... Type: noncoding Potential: -1.198 Folding energies... MFEI: -24.837 AMFE: -0.687 GC content %: 36.172 | |
| Gtomentosum_Gotom.D03G125100.4 Gotom.D03G125100.4 |
High | No | 983 | OG0182275 | Get ORF Coding potential... Type: noncoding Potential: -0.882 Folding energies... MFEI: -23.250 AMFE: -0.651 GC content %: 35.707 | |
| Gtomentosum_Gotom.D03G125100.5 Gotom.D03G125100.5 |
High | No | 687 | OG0182276 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -24.578 AMFE: -0.616 GC content %: 39.884 | |
| Gtomentosum_Gotom.D03G125100.6 Gotom.D03G125100.6 |
High | No | 658 | OG0182277 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -24.939 AMFE: -0.624 GC content %: 39.970 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
