GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.D04G220300 [ Gotom.D04G220300]	D04	53097178	53102958	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.D04G220300.1 Gotom.D04G220300.1	High	No	484	OG0002056		Get ORF Coding potential... Type: noncoding Potential: -0.177 Folding energies... MFEI: -25.413 AMFE: -0.603 GC content %: 42.149
Gtomentosum_Gotom.D04G220300.2 Gotom.D04G220300.2	High	No	450	OG0002056		Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -27.111 AMFE: -0.601 GC content %: 45.111
Gtomentosum_Gotom.D04G220300.3 Gotom.D04G220300.3	High	No	430	OG0002056		Get ORF Coding potential... Type: noncoding Potential: -0.365 Folding energies... MFEI: -24.907 AMFE: -0.579 GC content %: 43.023

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).