GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.D05G105700 [ Gotom.D05G105700]	D05	7916852	7918374	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.D05G105700.1 Gotom.D05G105700.1	High	No	602	OG0005253		Get ORF Coding potential... Type: noncoding Potential: -0.886 Folding energies... MFEI: -23.455 AMFE: -0.581 GC content %: 40.365
Gtomentosum_Gotom.D05G105700.2 Gotom.D05G105700.2	High	No	483	OG0182432		Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -25.983 AMFE: -0.586 GC content %: 44.306

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).