Gtomentosum Gotom.D06G063600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D06G063600 [ Gotom.D06G063600] |
D06 | 7416071 | 7420334 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D06G063600.1 Gotom.D06G063600.1 |
High | No | 1175 | OG0011896 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -23.847 AMFE: -0.605 GC content %: 39.404 | |
| Gtomentosum_Gotom.D06G063600.2 Gotom.D06G063600.2 |
High | No | 945 | OG0005307 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -21.313 AMFE: -0.556 GC content %: 38.307 | |
| Gtomentosum_Gotom.D06G063600.3 Gotom.D06G063600.3 |
High | No | 939 | OG0005307 | Get ORF Coding potential... Type: noncoding Potential: -0.939 Folding energies... MFEI: -21.013 AMFE: -0.550 GC content %: 38.232 | |
| Gtomentosum_Gotom.D06G063600.4 Gotom.D06G063600.4 |
High | No | 1169 | OG0011896 | Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -23.388 AMFE: -0.594 GC content %: 39.350 | |
| Gtomentosum_Gotom.D06G063600.5 Gotom.D06G063600.5 |
High | No | 943 | OG0011896 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -19.035 AMFE: -0.514 GC content %: 37.010 | |
| Gtomentosum_Gotom.D06G063600.6 Gotom.D06G063600.6 |
High | No | 270 | OG0005307 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -17.296 AMFE: -0.396 GC content %: 43.704 | |
| Gtomentosum_Gotom.D06G063600.7 Gotom.D06G063600.7 |
High | No | 264 | OG0011896 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -14.583 AMFE: -0.335 GC content %: 43.561 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
