GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.D07G129400 [ Gotom.D07G129400]	D07	16221713	16223866	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.D07G129400.1 Gotom.D07G129400.1	High	No	1053	OG0000913		Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -24.435 AMFE: -0.667 GC content %: 36.657
Gtomentosum_Gotom.D07G129400.2 Gotom.D07G129400.2	High	No	814	OG0000913		Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -22.862 AMFE: -0.665 GC content %: 34.398
Gtomentosum_Gotom.D07G129400.3 Gotom.D07G129400.3	High	No	885	OG0000913		Get ORF Coding potential... Type: noncoding Potential: -0.959 Folding energies... MFEI: -23.729 AMFE: -0.675 GC content %: 35.141

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).