GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.D07G216700 [ Gotom.D07G216700]	D07	45374518	45377079	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.D07G216700.1 Gotom.D07G216700.1	High	No	1167	OG0182805		Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -21.148 AMFE: -0.603 GC content %: 35.047
Gtomentosum_Gotom.D07G216700.2 Gotom.D07G216700.2	High	No	595	OG0011400		Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -16.975 AMFE: -0.445 GC content %: 38.151
Gtomentosum_Gotom.D07G216700.3 Gotom.D07G216700.3	High	No	601	OG0011400		Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -12.612 AMFE: -0.366 GC content %: 34.443

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).