Gtomentosum Gotom.D07G245300
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D07G245300 [ Gotom.D07G245300] |
D07 | 52092905 | 52095987 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D07G245300.1 Gotom.D07G245300.1 |
Low | No | 804 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.319 Folding energies... MFEI: -27.002 AMFE: -0.639 GC content %: 42.289 | |
| Gtomentosum_Gotom.D07G245300.2 Gotom.D07G245300.2 |
Low | No | 870 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.495 Folding energies... MFEI: -27.575 AMFE: -0.663 GC content %: 41.609 | |
| Gtomentosum_Gotom.D07G245300.3 Gotom.D07G245300.3 |
Low | No | 907 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.506 Folding energies... MFEI: -27.023 AMFE: -0.664 GC content %: 40.684 | |
| Gtomentosum_Gotom.D07G245300.4 Gotom.D07G245300.4 |
Low | No | 1205 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.569 Folding energies... MFEI: -24.888 AMFE: -0.634 GC content %: 39.253 | |
| Gtomentosum_Gotom.D07G245300.5 Gotom.D07G245300.5 |
Low | No | 874 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.496 Folding energies... MFEI: -27.391 AMFE: -0.661 GC content %: 41.419 | |
| Gtomentosum_Gotom.D07G245300.6 Gotom.D07G245300.6 |
Low | No | 1235 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.574 Folding energies... MFEI: -24.664 AMFE: -0.637 GC content %: 38.704 | |
| Gtomentosum_Gotom.D07G245300.7 Gotom.D07G245300.7 |
Low | No | 1187 | OG0000256 | Get ORF Coding potential... Type: noncoding Potential: -0.566 Folding energies... MFEI: -24.726 AMFE: -0.628 GC content %: 39.343 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Gtomentosum_Gotom.D07G245300.7 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Gtomentosum_Gotom.D07G245300.5 | SwissProt | 2021-04-01 | F4JZT3 | 3.46e-5 |
| Gtomentosum_Gotom.D07G245300.6 | SwissProt | 2021-04-01 | F4JZT3 | 5.48e-5 |
| Gtomentosum_Gotom.D07G245300.1 | SwissProt | 2021-04-01 | F4JZT3 | 3.44e-5 |
| Gtomentosum_Gotom.D07G245300.7 | SwissProt | 2021-04-01 | F4JZT3 | 5.91e-5 |
| Gtomentosum_Gotom.D07G245300.2 | SwissProt | 2021-04-01 | F4JZT3 | 3.9e-5 |
| Gtomentosum_Gotom.D07G245300.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Gtomentosum_Gotom.D07G245300.3 | SwissProt | 2021-04-01 | F4JZT3 | 3.67e-5 |
| Gtomentosum_Gotom.D07G245300.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Gtomentosum_Gotom.D07G245300.4 | SwissProt | 2021-04-01 | F4JZT3 | 5.32e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
