Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gtomentosum_Gotom.D08G219700 [ Gotom.D08G219700] |
D08 | 57929578 | 57931984 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gtomentosum_Gotom.D08G219700.10 Gotom.D08G219700.10 |
Low | No | 1335 | OG0001728 | Get ORF Coding potential... Type: noncoding Potential: -0.136 Folding energies... MFEI: -24.217 AMFE: -0.603 GC content %: 40.150 | |
Gtomentosum_Gotom.D08G219700.11 Gotom.D08G219700.11 |
Low | No | 1183 | OG0001728 | Get ORF Coding potential... Type: noncoding Potential: -0.050 Folding energies... MFEI: -24.227 AMFE: -0.598 GC content %: 40.490 | |
Gtomentosum_Gotom.D08G219700.5 Gotom.D08G219700.5 |
Low | No | 1219 | OG0001728 | Get ORF Coding potential... Type: noncoding Potential: -0.094 Folding energies... MFEI: -23.790 AMFE: -0.594 GC content %: 40.033 | |
Gtomentosum_Gotom.D08G219700.6 Gotom.D08G219700.6 |
Low | No | 1193 | OG0001728 | Get ORF Coding potential... Type: noncoding Potential: -0.068 Folding energies... MFEI: -23.688 AMFE: -0.595 GC content %: 39.816 | |
Gtomentosum_Gotom.D08G219700.9 Gotom.D08G219700.9 |
Low | No | 983 | OG0001728 | Get ORF Coding potential... Type: noncoding Potential: -0.058 Folding energies... MFEI: -24.954 AMFE: -0.581 GC content %: 42.930 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Gtomentosum_Gotom.D08G219700.11 | SwissProt | 2021-04-01 | Q9XJ36 | 4.88e-11 |
Gtomentosum_Gotom.D08G219700.5 | SwissProt | 2021-04-01 | Q9XJ36 | 3.55e-15 |
Gtomentosum_Gotom.D08G219700.6 | SwissProt | 2021-04-01 | Q9XJ36 | 5.19e-11 |
Gtomentosum_Gotom.D08G219700.9 | SwissProt | 2021-04-01 | Q9XJ36 | 9.45e-15 |
Gtomentosum_Gotom.D08G219700.10 | SwissProt | 2021-04-01 | Q9XJ36 | 6.14e-11 |