Gtomentosum Gotom.D09G108400
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D09G108400 [ Gotom.D09G108400] |
D09 | 34124184 | 34129979 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D09G108400.1 Gotom.D09G108400.1 |
High | No | 706 | OG0000914 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -18.966 AMFE: -0.515 GC content %: 36.827 | |
| Gtomentosum_Gotom.D09G108400.2 Gotom.D09G108400.2 |
High | No | 788 | OG0000914 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -18.921 AMFE: -0.505 GC content %: 37.437 | |
| Gtomentosum_Gotom.D09G108400.3 Gotom.D09G108400.3 |
High | No | 881 | OG0000914 | Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -18.751 AMFE: -0.502 GC content %: 37.344 | |
| Gtomentosum_Gotom.D09G108400.4 Gotom.D09G108400.4 |
High | No | 767 | OG0000914 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -19.113 AMFE: -0.518 GC content %: 36.897 | |
| Gtomentosum_Gotom.D09G108400.5 Gotom.D09G108400.5 |
High | No | 865 | OG0000914 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -19.156 AMFE: -0.518 GC content %: 36.994 | |
| Gtomentosum_Gotom.D09G108400.6 Gotom.D09G108400.6 |
High | No | 636 | OG0000914 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -18.066 AMFE: -0.504 GC content %: 35.849 | |
| Gtomentosum_Gotom.D09G108400.7 Gotom.D09G108400.7 |
High | No | 825 | OG0000914 | Get ORF Coding potential... Type: noncoding Potential: -0.937 Folding energies... MFEI: -20.327 AMFE: -0.518 GC content %: 39.273 | |
| Gtomentosum_Gotom.D09G108400.8 Gotom.D09G108400.8 |
High | No | 617 | OG0000914 | Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -19.789 AMFE: -0.496 GC content %: 39.870 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
