GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.D09G129500 [ Gotom.D09G129500]	D09	37011611	37015238	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.D09G129500.1 Gotom.D09G129500.1	High	No	930	OG0033632		Get ORF Coding potential... Type: noncoding Potential: -0.509 Folding energies... MFEI: -25.817 AMFE: -0.690 GC content %: 37.419
Gtomentosum_Gotom.D09G129500.2 Gotom.D09G129500.2	High	No	894	OG0005415		Get ORF Coding potential... Type: noncoding Potential: -0.223 Folding energies... MFEI: -26.521 AMFE: -0.706 GC content %: 37.584

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).