GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.D10G256500 [ Gotom.D10G256500]	D10	57825377	57829502	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.D10G256500.1 Gotom.D10G256500.1	High	No	1137	OG0000460		Get ORF Coding potential... Type: noncoding Potential: -0.671 Folding energies... MFEI: -23.553 AMFE: -0.647 GC content %: 36.412
Gtomentosum_Gotom.D10G256500.2 Gotom.D10G256500.2	High	No	1099	OG0000460		Get ORF Coding potential... Type: noncoding Potential: -0.663 Folding energies... MFEI: -23.904 AMFE: -0.652 GC content %: 36.670
Gtomentosum_Gotom.D10G256500.3 Gotom.D10G256500.3	High	No	955	OG0000460		Get ORF Coding potential... Type: noncoding Potential: -0.629 Folding energies... MFEI: -23.832 AMFE: -0.636 GC content %: 37.487
Gtomentosum_Gotom.D10G256500.4 Gotom.D10G256500.4	High	No	336	OG0000460		Get ORF Coding potential... Type: noncoding Potential: -0.373 Folding energies... MFEI: -24.881 AMFE: -0.597 GC content %: 41.667

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).