Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Gtomentosum_Gotom.D11G089900 [ Gotom.D11G089900] |
D11 | 6821888 | 6824240 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Gtomentosum_Gotom.D11G089900.1 Gotom.D11G089900.1 |
High | No | 1448 | OG0000580 | Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -21.761 AMFE: -0.615 GC content %: 35.359 | |
Gtomentosum_Gotom.D11G089900.2 Gotom.D11G089900.2 |
High | No | 1006 | OG0000580 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -22.048 AMFE: -0.579 GC content %: 38.072 | |
Gtomentosum_Gotom.D11G089900.3 Gotom.D11G089900.3 |
High | No | 888 | OG0000580 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -21.959 AMFE: -0.574 GC content %: 38.288 | |
Gtomentosum_Gotom.D11G089900.4 Gotom.D11G089900.4 |
High | No | 960 | OG0000580 | Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -21.927 AMFE: -0.574 GC content %: 38.229 | |
Gtomentosum_Gotom.D11G089900.5 Gotom.D11G089900.5 |
High | No | 930 | OG0000580 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -22.183 AMFE: -0.579 GC content %: 38.280 | |
Gtomentosum_Gotom.D11G089900.6 Gotom.D11G089900.6 |
High | No | 300 | OG0000580 | Get ORF Coding potential... Type: noncoding Potential: -0.609 Folding energies... MFEI: -20.000 AMFE: -0.545 GC content %: 36.667 | |
Gtomentosum_Gotom.D11G089900.7 Gotom.D11G089900.7 |
High | No | 285 | OG0000580 | Get ORF Coding potential... Type: noncoding Potential: -0.613 Folding energies... MFEI: -20.667 AMFE: -0.550 GC content %: 37.544 |