Gtomentosum Gotom.D12G201600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D12G201600 [ Gotom.D12G201600] |
D12 | 49159834 | 49161389 | v1.1 | Gossypium tomentosum (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Gtomentosum_Gotom.D12G201600.2 Gotom.D12G201600.2 |
High | No | 1035 | OG0019420 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -18.473 AMFE: -0.493 GC content %: 37.488 | |
| Gtomentosum_Gotom.D12G201600.3 Gotom.D12G201600.3 |
High | No | 1006 | OG0019420 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -18.131 AMFE: -0.490 GC content %: 36.978 | |
| Gtomentosum_Gotom.D12G201600.4 Gotom.D12G201600.4 |
High | No | 1001 | OG0019420 | Get ORF Coding potential... Type: noncoding Potential: -1.099 Folding energies... MFEI: -18.202 AMFE: -0.491 GC content %: 37.063 | |
| Gtomentosum_Gotom.D12G201600.5 Gotom.D12G201600.5 |
High | No | 228 | OG0001212 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -12.544 AMFE: -0.301 GC content %: 41.667 | |
| Gtomentosum_Gotom.D12G201600.6 Gotom.D12G201600.6 |
High | No | 210 | OG0183516 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -11.095 AMFE: -0.262 GC content %: 42.381 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
