GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Gtomentosum_Gotom.D13G130900 [ Gotom.D13G130900]	D13	32699156	32701341	v1.1	Gossypium tomentosum (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Gtomentosum_Gotom.D13G130900.1 Gotom.D13G130900.1	High	No	666	OG0019422		Get ORF Coding potential... Type: noncoding Potential: -1.065 Folding energies... MFEI: -21.667 AMFE: -0.547 GC content %: 39.640
Gtomentosum_Gotom.D13G130900.2 Gotom.D13G130900.2	High	No	539	OG0019422		Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -23.904 AMFE: -0.560 GC content %: 42.672
Gtomentosum_Gotom.D13G130900.3 Gotom.D13G130900.3	High	No	532	OG0019422		Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -24.135 AMFE: -0.568 GC content %: 42.481

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).