GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hannuus_HanXRQChr13g0423791 [ HanXRQChr13g0423791]	HanXRQChr13	188965389	188966494	r1.2	Helianthus annuus (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hannuus_HanXRQChr13g0423791 HanXRQChr13g0423791	Low	No	301	OG0034878		Get ORF Coding potential... Type: noncoding Potential: -0.875 Folding energies... MFEI: -24.817 AMFE: -0.584 GC content %: 42.525

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Hannuus_HanXRQChr13g0423791	SwissProt	2021-04-01	O81312	5.95e-8

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).