Hvulgare HORVU0Hr1G007420
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G007420 [ HORVU0Hr1G007420] |
chrUn | 42209852 | 42222956 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G007420.1 HORVU0Hr1G007420.1 |
High | No | 473 | OG0035247 | Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -35.349 AMFE: -0.651 GC content %: 54.334 | |
| Hvulgare_HORVU0Hr1G007420.3 HORVU0Hr1G007420.3 |
Low | No | 1162 | OG0035248 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -27.117 AMFE: -0.631 GC content %: 42.943 | |
| Hvulgare_HORVU0Hr1G007420.4 HORVU0Hr1G007420.4 |
Low | No | 718 | OG0011954 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -29.763 AMFE: -0.662 GC content %: 44.986 | |
| Hvulgare_HORVU0Hr1G007420.6 HORVU0Hr1G007420.6 |
Low | No | 697 | OG0011954 | Get ORF Coding potential... Type: noncoding Potential: -0.590 Folding energies... MFEI: -35.294 AMFE: -0.644 GC content %: 54.806 | |
| Hvulgare_HORVU0Hr1G007420.7 HORVU0Hr1G007420.7 |
Low | No | 747 | OG0035249 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -34.444 AMFE: -0.628 GC content %: 54.886 | |
| Hvulgare_HORVU0Hr1G007420.8 HORVU0Hr1G007420.8 |
Low | No | 387 | OG0011955 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -26.563 AMFE: -0.578 GC content %: 45.995 | |
| Hvulgare_HORVU0Hr1G007420.9 HORVU0Hr1G007420.9 |
Low | No | 728 | OG0011955 | Get ORF Coding potential... Type: noncoding Potential: -1.106 Folding energies... MFEI: -32.514 AMFE: -0.595 GC content %: 54.670 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G007420.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Hvulgare_HORVU0Hr1G007420.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Hvulgare_HORVU0Hr1G007420.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Hvulgare_HORVU0Hr1G007420.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Hvulgare_HORVU0Hr1G007420.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac | |
| Hvulgare_HORVU0Hr1G007420.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
