Hvulgare HORVU0Hr1G010840
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G010840 [ HORVU0Hr1G010840] |
chrUn | 61241044 | 61257123 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G010840.1 HORVU0Hr1G010840.1 |
Low | No | 4182 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -25.658 AMFE: -0.613 GC content %: 41.870 | |
| Hvulgare_HORVU0Hr1G010840.10 HORVU0Hr1G010840.10 |
Low | No | 2163 | OG0001061 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -26.260 AMFE: -0.615 GC content %: 42.672 | |
| Hvulgare_HORVU0Hr1G010840.11 HORVU0Hr1G010840.11 |
Low | No | 2163 | OG0005662 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -26.260 AMFE: -0.615 GC content %: 42.672 | |
| Hvulgare_HORVU0Hr1G010840.12 HORVU0Hr1G010840.12 |
Low | No | 2389 | OG0001400 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -25.919 AMFE: -0.641 GC content %: 40.435 | |
| Hvulgare_HORVU0Hr1G010840.13 HORVU0Hr1G010840.13 |
Low | No | 1805 | OG0035314 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -26.039 AMFE: -0.603 GC content %: 43.213 | |
| Hvulgare_HORVU0Hr1G010840.14 HORVU0Hr1G010840.14 |
Low | No | 3501 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -25.161 AMFE: -0.645 GC content %: 39.017 | |
| Hvulgare_HORVU0Hr1G010840.15 HORVU0Hr1G010840.15 |
Low | No | 3634 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -24.964 AMFE: -0.643 GC content %: 38.828 | |
| Hvulgare_HORVU0Hr1G010840.16 HORVU0Hr1G010840.16 |
Low | No | 1679 | OG0011966 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -26.307 AMFE: -0.616 GC content %: 42.704 | |
| Hvulgare_HORVU0Hr1G010840.17 HORVU0Hr1G010840.17 |
Low | No | 1617 | OG0005662 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -26.339 AMFE: -0.621 GC content %: 42.424 | |
| Hvulgare_HORVU0Hr1G010840.18 HORVU0Hr1G010840.18 |
Low | No | 2163 | OG0005662 | Get ORF Coding potential... Type: noncoding Potential: -1.166 Folding energies... MFEI: -26.112 AMFE: -0.615 GC content %: 42.441 | |
| Hvulgare_HORVU0Hr1G010840.19 HORVU0Hr1G010840.19 |
Low | No | 1851 | OG0011966 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -26.224 AMFE: -0.631 GC content %: 41.545 | |
| Hvulgare_HORVU0Hr1G010840.2 HORVU0Hr1G010840.2 |
Low | No | 4226 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -25.414 AMFE: -0.610 GC content %: 41.647 | |
| Hvulgare_HORVU0Hr1G010840.20 HORVU0Hr1G010840.20 |
Low | No | 2635 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -26.076 AMFE: -0.648 GC content %: 40.228 | |
| Hvulgare_HORVU0Hr1G010840.21 HORVU0Hr1G010840.21 |
Low | No | 1096 | OG0001061 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -29.717 AMFE: -0.620 GC content %: 47.901 | |
| Hvulgare_HORVU0Hr1G010840.22 HORVU0Hr1G010840.22 |
Low | No | 2139 | OG0001061 | Get ORF Coding potential... Type: noncoding Potential: -1.028 Folding energies... MFEI: -25.774 AMFE: -0.617 GC content %: 41.748 | |
| Hvulgare_HORVU0Hr1G010840.23 HORVU0Hr1G010840.23 |
Low | No | 1390 | OG0035315 | Get ORF Coding potential... Type: noncoding Potential: -1.254 Folding energies... MFEI: -27.115 AMFE: -0.594 GC content %: 45.683 | |
| Hvulgare_HORVU0Hr1G010840.24 HORVU0Hr1G010840.24 |
Low | No | 2083 | OG0035316 | Get ORF Coding potential... Type: noncoding Potential: -1.163 Folding energies... MFEI: -25.939 AMFE: -0.611 GC content %: 42.439 | |
| Hvulgare_HORVU0Hr1G010840.25 HORVU0Hr1G010840.25 |
Low | No | 3546 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -25.031 AMFE: -0.644 GC content %: 38.889 | |
| Hvulgare_HORVU0Hr1G010840.26 HORVU0Hr1G010840.26 |
Low | No | 3681 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -24.925 AMFE: -0.644 GC content %: 38.712 | |
| Hvulgare_HORVU0Hr1G010840.27 HORVU0Hr1G010840.27 |
Low | No | 3417 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -24.946 AMFE: -0.636 GC content %: 39.245 | |
| Hvulgare_HORVU0Hr1G010840.28 HORVU0Hr1G010840.28 |
Low | No | 5093 | OG0011967 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -24.720 AMFE: -0.657 GC content %: 37.640 | |
| Hvulgare_HORVU0Hr1G010840.29 HORVU0Hr1G010840.29 |
Low | No | 3318 | OG0035317 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -25.392 AMFE: -0.653 GC content %: 38.879 | |
| Hvulgare_HORVU0Hr1G010840.3 HORVU0Hr1G010840.3 |
Low | No | 4093 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -25.573 AMFE: -0.611 GC content %: 41.852 | |
| Hvulgare_HORVU0Hr1G010840.30 HORVU0Hr1G010840.30 |
Low | No | 3822 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -24.898 AMFE: -0.644 GC content %: 38.645 | |
| Hvulgare_HORVU0Hr1G010840.31 HORVU0Hr1G010840.31 |
Low | No | 2041 | OG0035318 | Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -25.512 AMFE: -0.614 GC content %: 41.548 | |
| Hvulgare_HORVU0Hr1G010840.32 HORVU0Hr1G010840.32 |
Low | No | 2361 | OG0001400 | Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -25.070 AMFE: -0.630 GC content %: 39.771 | |
| Hvulgare_HORVU0Hr1G010840.33 HORVU0Hr1G010840.33 |
Low | No | 1860 | OG0035319 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -25.177 AMFE: -0.605 GC content %: 41.613 | |
| Hvulgare_HORVU0Hr1G010840.34 HORVU0Hr1G010840.34 |
Low | No | 948 | OG0011968 | Get ORF Coding potential... Type: noncoding Potential: -0.479 Folding energies... MFEI: -27.943 AMFE: -0.586 GC content %: 47.679 | |
| Hvulgare_HORVU0Hr1G010840.35 HORVU0Hr1G010840.35 |
Low | No | 1685 | OG0001061 | Get ORF Coding potential... Type: noncoding Potential: -1.226 Folding energies... MFEI: -24.516 AMFE: -0.589 GC content %: 41.602 | |
| Hvulgare_HORVU0Hr1G010840.36 HORVU0Hr1G010840.36 |
Low | No | 805 | OG0035320 | Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -28.298 AMFE: -0.656 GC content %: 43.106 | |
| Hvulgare_HORVU0Hr1G010840.37 HORVU0Hr1G010840.37 |
Low | No | 1159 | OG0035321 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -28.171 AMFE: -0.613 GC content %: 45.988 | |
| Hvulgare_HORVU0Hr1G010840.38 HORVU0Hr1G010840.38 |
Low | No | 915 | OG0001061 | Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -26.590 AMFE: -0.582 GC content %: 45.683 | |
| Hvulgare_HORVU0Hr1G010840.39 HORVU0Hr1G010840.39 |
High | No | 1921 | OG0035322 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -24.472 AMFE: -0.628 GC content %: 38.990 | |
| Hvulgare_HORVU0Hr1G010840.4 HORVU0Hr1G010840.4 |
Low | No | 1799 | OG0035323 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -28.449 AMFE: -0.564 GC content %: 50.417 | |
| Hvulgare_HORVU0Hr1G010840.40 HORVU0Hr1G010840.40 |
Low | No | 1843 | OG0001061 | Get ORF Coding potential... Type: noncoding Potential: -1.285 Folding energies... MFEI: -23.852 AMFE: -0.596 GC content %: 39.989 | |
| Hvulgare_HORVU0Hr1G010840.41 HORVU0Hr1G010840.41 |
Low | No | 1750 | OG0035324 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -24.011 AMFE: -0.588 GC content %: 40.857 | |
| Hvulgare_HORVU0Hr1G010840.42 HORVU0Hr1G010840.42 |
High | No | 2866 | OG0001400 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -23.870 AMFE: -0.646 GC content %: 36.950 | |
| Hvulgare_HORVU0Hr1G010840.43 HORVU0Hr1G010840.43 |
Low | No | 3805 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -23.861 AMFE: -0.640 GC content %: 37.267 | |
| Hvulgare_HORVU0Hr1G010840.44 HORVU0Hr1G010840.44 |
Low | No | 3200 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.421 Folding energies... MFEI: -23.816 AMFE: -0.638 GC content %: 37.312 | |
| Hvulgare_HORVU0Hr1G010840.45 HORVU0Hr1G010840.45 |
Low | No | 4229 | OG0035325 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -23.786 AMFE: -0.646 GC content %: 36.794 | |
| Hvulgare_HORVU0Hr1G010840.46 HORVU0Hr1G010840.46 |
High | No | 464 | OG0035326 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -23.448 AMFE: -0.591 GC content %: 39.655 | |
| Hvulgare_HORVU0Hr1G010840.47 HORVU0Hr1G010840.47 |
High | No | 1574 | OG0035327 | Get ORF Coding potential... Type: noncoding Potential: -1.221 Folding energies... MFEI: -23.234 AMFE: -0.604 GC content %: 38.437 | |
| Hvulgare_HORVU0Hr1G010840.48 HORVU0Hr1G010840.48 |
Low | No | 1816 | OG0011968 | Get ORF Coding potential... Type: noncoding Potential: -1.018 Folding energies... MFEI: -22.748 AMFE: -0.587 GC content %: 38.767 | |
| Hvulgare_HORVU0Hr1G010840.49 HORVU0Hr1G010840.49 |
Low | No | 3545 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -23.856 AMFE: -0.643 GC content %: 37.123 | |
| Hvulgare_HORVU0Hr1G010840.5 HORVU0Hr1G010840.5 |
Low | No | 1665 | OG0035328 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -29.688 AMFE: -0.569 GC content %: 52.132 | |
| Hvulgare_HORVU0Hr1G010840.50 HORVU0Hr1G010840.50 |
Low | No | 4795 | OG0035329 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -23.965 AMFE: -0.653 GC content %: 36.705 | |
| Hvulgare_HORVU0Hr1G010840.51 HORVU0Hr1G010840.51 |
High | No | 2539 | OG0001400 | Get ORF Coding potential... Type: noncoding Potential: -1.038 Folding energies... MFEI: -23.178 AMFE: -0.638 GC content %: 36.314 | |
| Hvulgare_HORVU0Hr1G010840.52 HORVU0Hr1G010840.52 |
High | No | 1933 | OG0001400 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -24.046 AMFE: -0.641 GC content %: 37.506 | |
| Hvulgare_HORVU0Hr1G010840.53 HORVU0Hr1G010840.53 |
High | No | 1763 | OG0001400 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -23.318 AMFE: -0.623 GC content %: 37.436 | |
| Hvulgare_HORVU0Hr1G010840.54 HORVU0Hr1G010840.54 |
Low | No | 3557 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -23.489 AMFE: -0.637 GC content %: 36.885 | |
| Hvulgare_HORVU0Hr1G010840.55 HORVU0Hr1G010840.55 |
Low | No | 3117 | OG0000196 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -23.529 AMFE: -0.641 GC content %: 36.702 | |
| Hvulgare_HORVU0Hr1G010840.56 HORVU0Hr1G010840.56 |
Low | No | 1764 | OG0001061 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -23.226 AMFE: -0.616 GC content %: 37.698 | |
| Hvulgare_HORVU0Hr1G010840.6 HORVU0Hr1G010840.6 |
Low | No | 2613 | OG0035330 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -26.414 AMFE: -0.578 GC content %: 45.733 | |
| Hvulgare_HORVU0Hr1G010840.7 HORVU0Hr1G010840.7 |
Low | No | 5155 | OG0011967 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -24.945 AMFE: -0.656 GC content %: 38.041 | |
| Hvulgare_HORVU0Hr1G010840.8 HORVU0Hr1G010840.8 |
Low | No | 2210 | OG0035331 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -25.977 AMFE: -0.635 GC content %: 40.905 | |
| Hvulgare_HORVU0Hr1G010840.9 HORVU0Hr1G010840.9 |
Low | No | 1885 | OG0035332 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -26.424 AMFE: -0.600 GC content %: 44.032 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G010840.54 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU0Hr1G010840.17 | SwissProt | 2021-04-01 | Q9LE33 | 5.95e-10 |
| Hvulgare_HORVU0Hr1G010840.31 | SwissProt | 2021-04-01 | Q9LE33 | 1.27e-9 |
| Hvulgare_HORVU0Hr1G010840.14 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU0Hr1G010840.31 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU0Hr1G010840.45 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU0Hr1G010840.12 | SwissProt | 2021-04-01 | Q9LE33 | 2.71e-9 |
| Hvulgare_HORVU0Hr1G010840.27 | SwissProt | 2021-04-01 | Q9LE33 | 1.23e-9 |
| Hvulgare_HORVU0Hr1G010840.9 | SwissProt | 2021-04-01 | Q9LE33 | 8.1e-10 |
| Hvulgare_HORVU0Hr1G010840.26 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
