Hvulgare HORVU0Hr1G015890
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G015890 [ HORVU0Hr1G015890] |
chrUn | 86024174 | 86027332 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G015890.1 HORVU0Hr1G015890.1 |
Low | No | 2880 | OG0011979 | Get ORF Coding potential... Type: noncoding Potential: -0.350 Folding energies... MFEI: -29.472 AMFE: -0.648 GC content %: 45.451 | |
| Hvulgare_HORVU0Hr1G015890.10 HORVU0Hr1G015890.10 |
Low | No | 2576 | OG0035402 | Get ORF Coding potential... Type: noncoding Potential: -0.323 Folding energies... MFEI: -29.014 AMFE: -0.662 GC content %: 43.828 | |
| Hvulgare_HORVU0Hr1G015890.2 HORVU0Hr1G015890.2 |
Low | No | 2533 | OG0035403 | Get ORF Coding potential... Type: noncoding Potential: -0.322 Folding energies... MFEI: -30.442 AMFE: -0.639 GC content %: 47.612 | |
| Hvulgare_HORVU0Hr1G015890.4 HORVU0Hr1G015890.4 |
Low | No | 2705 | OG0035404 | Get ORF Coding potential... Type: noncoding Potential: -0.346 Folding energies... MFEI: -29.649 AMFE: -0.642 GC content %: 46.211 | |
| Hvulgare_HORVU0Hr1G015890.5 HORVU0Hr1G015890.5 |
Low | No | 2965 | OG0035405 | Get ORF Coding potential... Type: noncoding Potential: -0.353 Folding energies... MFEI: -29.612 AMFE: -0.655 GC content %: 45.194 | |
| Hvulgare_HORVU0Hr1G015890.6 HORVU0Hr1G015890.6 |
Low | No | 2919 | OG0035406 | Get ORF Coding potential... Type: noncoding Potential: -0.351 Folding energies... MFEI: -29.500 AMFE: -0.648 GC content %: 45.495 | |
| Hvulgare_HORVU0Hr1G015890.7 HORVU0Hr1G015890.7 |
Low | No | 2755 | OG0035407 | Get ORF Coding potential... Type: noncoding Potential: -0.347 Folding energies... MFEI: -29.575 AMFE: -0.642 GC content %: 46.062 | |
| Hvulgare_HORVU0Hr1G015890.8 HORVU0Hr1G015890.8 |
Low | No | 2599 | OG0011979 | Get ORF Coding potential... Type: noncoding Potential: -0.343 Folding energies... MFEI: -29.377 AMFE: -0.644 GC content %: 45.633 | |
| Hvulgare_HORVU0Hr1G015890.9 HORVU0Hr1G015890.9 |
Low | No | 2600 | OG0035408 | Get ORF Coding potential... Type: noncoding Potential: -0.343 Folding energies... MFEI: -29.354 AMFE: -0.639 GC content %: 45.962 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G015890.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/DIRS | |
| Hvulgare_HORVU0Hr1G015890.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/DIRS | |
| Hvulgare_HORVU0Hr1G015890.5 | SwissProt | 2021-04-01 | Q9LJR3 | 1.84e-11 |
| Hvulgare_HORVU0Hr1G015890.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/DIRS | |
| Hvulgare_HORVU0Hr1G015890.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/DIRS | |
| Hvulgare_HORVU0Hr1G015890.6 | SwissProt | 2021-04-01 | Q9LJR3 | 1.8e-11 |
| Hvulgare_HORVU0Hr1G015890.1 | SwissProt | 2021-04-01 | Q9LJR3 | 1.77e-11 |
| Hvulgare_HORVU0Hr1G015890.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/DIRS | |
| Hvulgare_HORVU0Hr1G015890.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/DIRS | |
| Hvulgare_HORVU0Hr1G015890.7 | SwissProt | 2021-04-01 | Q9LJR3 | 1.66e-11 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
