Hvulgare HORVU0Hr1G024320
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G024320 [ HORVU0Hr1G024320] |
chrUn | 125968893 | 125972045 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G024320.2 HORVU0Hr1G024320.2 |
Low | No | 1250 | OG0035533 | Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -26.864 AMFE: -0.626 GC content %: 42.880 | |
| Hvulgare_HORVU0Hr1G024320.3 HORVU0Hr1G024320.3 |
Low | No | 1323 | OG0035534 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -26.591 AMFE: -0.629 GC content %: 42.252 | |
| Hvulgare_HORVU0Hr1G024320.4 HORVU0Hr1G024320.4 |
Low | No | 649 | OG0011994 | Get ORF Coding potential... Type: noncoding Potential: -0.887 Folding energies... MFEI: -25.300 AMFE: -0.632 GC content %: 40.062 | |
| Hvulgare_HORVU0Hr1G024320.5 HORVU0Hr1G024320.5 |
Low | No | 1235 | OG0011994 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -27.466 AMFE: -0.636 GC content %: 43.158 | |
| Hvulgare_HORVU0Hr1G024320.6 HORVU0Hr1G024320.6 |
Low | No | 1229 | OG0011995 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -26.867 AMFE: -0.624 GC content %: 43.043 | |
| Hvulgare_HORVU0Hr1G024320.7 HORVU0Hr1G024320.7 |
Low | No | 1199 | OG0011995 | Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -26.706 AMFE: -0.623 GC content %: 42.869 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G024320.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU0Hr1G024320.3 | SwissProt | 2021-04-01 | Q9LDY2 | 8.34e-7 |
| Hvulgare_HORVU0Hr1G024320.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU0Hr1G024320.4 | SwissProt | 2021-04-01 | Q9LDY2 | 2.33e-6 |
| Hvulgare_HORVU0Hr1G024320.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU0Hr1G024320.5 | SwissProt | 2021-04-01 | Q9LDY2 | 1.11e-5 |
| Hvulgare_HORVU0Hr1G024320.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU0Hr1G024320.6 | SwissProt | 2021-04-01 | Q9LDY2 | 1.1e-5 |
| Hvulgare_HORVU0Hr1G024320.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU0Hr1G024320.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
